| Protein ZmTHX23 | |
|---|---|
|
ZmTHX23 is a protein in the Trihelix family.
|
|
| Information | |
| TF Name: | ZmTHX23 |
| Species: | Maize |
| TF Family: | Trihelix |
| Gene Name(Synonym): | THX23 |
| Uniprot ID: | B6TDT9 |
| Subgenome: | 1 |
Protein ZmTHX23
ZmTHX23 is a protein in the Trihelix family.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF13837 | Trihelix | |
| Zm00001eb071780_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d002424 | DAPseq |  |
sequence | fimo | position |
| Zm00001d002424 | DAPseq |  |
sequence | fimo | position |
| Zm00001d002424 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d002424 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmTHX23 is the regulator
Interactions where ZmTHX23 is the target
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Zm00001eb071780_T001 from maize genome v5
Amino Acid Sequence
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MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF13837 |
|
| Trihelix |
|
| PF13837 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CAGAAAAGTAACGGCAGGCAGAGGC...
CAGAAAAGTAACGGCAGGCAGAGGCGAGAAGCAAGAAGAAAACTTAGAAAAGCGAGGCGAGCAAGCAAATCGAGGCAAGAAAACGGGGGTTAAGGGCAGGGCCTGCAGTCCCCCTCCGCGGCCGCGCCTCGCCGCGGTTTACAGCCTGTCGTTAGGGATTGCTACCGTTGGTCAAGTCGCGCTGAGGAGACGAGGGCAGGAGGGGCGGTGGGCTGTGGGATGATGGAGGCGGGCGGCGCGGGCGCGGGAGCGGGAGGAAGGGACGAGAGGGTACCGCAGTGGGGCGCGCAGGAGACGCGGGAGCTAATCATGGCGCGCGGGGAGATGGAGCGGGAGACCGTCGCGGCGCGCCGCAGCGCCAAGACGATGTGGGAGGCCGTCGCCGCGCGCCTCCGGGAGCGAGGCTACCGACGAACCGCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCGTCAACCGCTACAAGGGGAAAGAAACTTCAGATCCAGAAAATGGTAGGCAGTGTCCCTTCTTTGAAGAGCTGCATGGTGTCTTCACAGAGCGTGCTAGAAATATGCAGCAACAACTCCTTGAGTCTGAATCTGGAGTTTCTGTCAAAACGAAACTGAAGCGACCTGGTGGTGACTGGTCATCTCGGGAGTCTGACGACAAGGAAGATGATGGTGAAGAAAGTGACGATGAGAAGCCGATGCACAACAGAAAGAGGAAAGCTGATGACAAGAAACAGCAACATCAAAGAATGTCTGAGAAGTCAAGAACAGGAATTTCGAGCATCCATGAACTGCTGCAGGATTTCCTGGTGCAGCAACAGCACATTGATGTCCGGTGGCGGGAGATGATCGAGAGACGTGCCCAGGAGCGGGTGGTTTTCGAACAACAATGGCGGCTGACAATGCAGAGGCTGGAGCAGGAGCGGTTGTTGCTGGAACACTCGTGGATGGAACGGGAGGAGCGAAGAAGGATGAAAGAAGAAGCACGAGCTGAAAAAAGGGATGCACTCCTGACCACTCTGTTGAACAAACTCCTGCAGGAAGATCTATAGCAGGATAAGCTTGCTCTTCGTTTCATCAGGGTTTAGCTGCAGAAGTGGACATTTTCTCACCTTGTTTTATCAATTCTTTGTAGCTACTACATTTATTGACATGTGATTTGTCAATTTCTTTCAGCATCTGTATTAGGTTCCTAGGGCTCTTTTTTCCAGTTATTTAGTAGAGCAAAGCTAATTTTATGCTTAATTGTGGTTGTAAGTATCATACTGCCAAGTAGGTCTACAGACCAATGCTAATATGCTTGAGAGATAATTGGTTTCTCTGTCAGCAATGGACAGAAGTTTATGTAATCGGCCTGTACAAAAATAAGTTCATGTGGCCTCAAAGG
GRMZM2G156348_T01 from maize genome v3
Amino Acid Sequence
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MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
Nucleotide Sequence
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GAATGGGCAGAAAAGTAACGGCAGG...
GAATGGGCAGAAAAGTAACGGCAGGCAGAGGCGAGAAGCAAGAAGAAAACTTAGAAAAGCGAGGCGAGCAAGCAAATCGAGGCAAGAAAACGGGGGTTAAGGGCAGGGCCTGCAGTCCCCCTCCGCGGCCGCGCCTCGCCGCGGTTTACAGCCTGTCGTTAGGGATTGCTACCGTTGGTCAAGTCGCGCTGAGGAGACGAGGGCAGGAGGGGCGGTGGGCTGTGGGATGATGGAGGCGGGCGGCGCGGGCGCGGGAGCGGGAGGAAGGGACGAGAGGGTACCGCAGTGGGGCGCGCAGGAGACGCGGGAGCTAATCATGGCGCGCGGGGAGATGGAGCGGGAGACCGTCGCGGCGCGCCGCAGCGCCAAGACGATGTGGGAGGCCGTCGCCGCGCGCCTCCGGGAGCGAGGCTACCGACGAACCGCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCGTCAACCGCTACAAGGGGAAAGAAACTTCAGATCCAGAAAATGGTAGGCAGTGTCCCTTCTTTGAAGAGCTGCATGGTGTCTTCACAGAGCGTGCTAGAAATATGCAGCAACAACTCCTTGAGTCTGAATCTGGAGTTTCTGTCAAAACGAAACTGAAGCGACCTGGTGGTGACTGGTCATCTCGGGAGTCTGACGACAAGGAAGATGATGGTGAAGAAAGTGACGATGAGAAGCCGATGCACAACAGAAAGAGGAAAGCTGATGACAAGAAACAGCAACATCAAAGAATGTCTGAGAAGTCAAGAACAGGAATTTCGAGCATCCATGAACTGCTGCAGGATTTCCTGGTGCAGCAACAGCACATTGATGTCCGGTGGCGGGAGATGATCGAGAGACGTGCCCAGGAGCGGGTGGTTTTCGAACAACAATGGCGGCTGACAATGCAGAGGCTGGAGCAGGAGCGGTTGTTGCTGGAACACTCGTGGATGGAACGGGAGGAGCGAAGAAGGATGAAAGAAGAAGCACGAGCTGAAAAAAGGGATGCACTCCTGACCACTCTGTTGAACAAACTCCTGCAGGAAGATCTATAGCAGGATAAGCTTGCTCTTCGTTTCATCAGGGTTTAGCTGCAGAAGTGGACATTTTCTCACCTTGTTTTATCAATTCTTTGTAGCTACTACATTTATTGACATGTGATTTGTCAATTTCTTTCAGCATCTGTATTAGGTTCCTAGGGCTCTTTTTTCCAGTTATTTAGTAGAGCAAAGCTAATTTTATGCTTAATTGTGGTTGTAAGTATCATACTGCCAAGTAGGTCTACAGACCAATGCTAATATGCTTGAGAGATAATTGGTTTCTCTGTCAGCAATGGACAGAAGTTTATGTAATCGGCCTGTACAAAAATAAGTTCATGTGGCCTCAAAGGAAAAAAAAA
Zm00001d002424_T001 from maize genome v4
Amino Acid Sequence
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MQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNRKRKADDKKQQHQRMSEKSRTGISSIHELLQD
FLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWMEREERRRMKEEARAEKRDALLTTLLNKLLQE
DL
Nucleotide Sequence
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GGCAAGAAAACGGGGGTTAAGGGCA...
GGCAAGAAAACGGGGGTTAAGGGCAGGGCCTGCAGTCCCCCTCCGCGGCCGCGCCTCGCCGCGGTTTACAGCCTGTCGTTAGGGATTGCTACCGTTGGTCAAGTCGCGCTGAGGAGACGAGGGCAGGAGGGGCGGTGGGCTGTGGGATGATGGAGGCGGGCGGCGCGGGCGCGGGAGCGGGAGGAAGGGACGAGAGGGTACCGCAGTGGGGCGCGCAGGAGACGCGGGAGCTAATCATGGCGCGCGGGGAGATGGAGCGGGAGACCGTCGCGGCGCGCCGCAGCGCCAAGACGATGTGGGAGGCCGTCGCCGCGCGCCTCCGGGAGCGAGGCTACCGACGAACCGCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCGTCAACCGCTACAAGGTAACACAATCATTCATCCCTCGTCCGGCTTATCCAGATAACTTTCTACCCTAGTCTCGTAAGGCTAGATTGACTGGTCTGATCTGGACCACCAGGTAACGATGCTCTAATGTACCGTTCATGTGTTGATGGCAAAATGATATGCATTGCTGGCTTGTGACTTTATCCTTAGGCTCAGCGTCCCCAAATTGGTCTTCTATCTTCTACAGGTCTATTTTGGGTTGTTAGCAGTGCGTCTACAACTCTCCCCCACGTTCACTTTTACTGCATTATTTCCACAACCATTTCCATAAGTAAAGGACATTGAGAAACCTTCGTGTTGAATGGAATGATGTTCAATGCAATAAAAAGAAGGGATTGTTCAGTCGTGAAGTTCTGCTGCCTTCTCTTGTTACTGATTAGAAATTGTTCATTTCTTCCAAAATTCAAGGGTGATTAGTATTTCCTCTATATGTTCATGATACTATAGACAACTGATTTTGCAGAATATATCATTGCATTGTGCTACACATGGTGGAACATGATGCTTCCAATTACACATTTTGAAGTAGGTGGATACCTAGTAATACTAAGATTTATAGATAAAATATATTTTATCTTGTACTAATTAATTTACAGCACATCATGGGGTTTCTGAAACTTTTGTTTCTGATTTCATGTTGTCTTCACAAAAATCACATAGAAGCAAGGTTCTGTTACTATATTTTGTATATTTTTTGGCATTAAAAAAGGTGTATTCCACTTTGTTTTGTTCAGAAATAAAAACATGGTACAAATGATTTTAAGAAGCTATGATAACTAAACAGATATCTAAGGTAATGAATTATTACTAGTGATAGAAAGGGGAATCCATCCATCCTTATCTTTGTTGACTATGAGTCTATGATGCATGAAAAGTCAATGTGGAACCTCAAGGGTTTGAGGGGAATTGAGTTGCAAATTATCCAGAATTGGTGGTTCAGTTAAAGTTTAAGATTTTCACTTTTTGAGATCATGGAGTCATTGTGAACCCTAATGAAGACTTTCTTCACATTGGTTAGTTTGCTTGTGAAATTGCACTTGAACTGGCTCAGAATGTGACATTTGTCCTGCATAACGATCGAAAAGGGAGGGGTGTTAAAATTGTGATACTACCTGTTAGGTGTGTGAGAGCATGCATGCATTGATTTGGTTTATTGAGAGAATAATGTACAAAATCTGTGCATTATTGGTGATGTTCCTGATGACCACAATAGTCATGTGTTATTGGTCTTTTGCTGCAATAGTTATAAAAGACTTTGTATTTTGTCTCAGCGAGAATGTCAGGAAATAGACCAATTATATATTTTTAATCAGGAGGGGATGAAAAATTGGAAGTTCCATGTTAGGTTCAGATTGACTCTGCTGTTGGGTTGGTTGGGTGGTGGGTCCAATTTCAAGCTTTGTATTAGAAGTTTTTTCTTTTATGCTTATGAAAACCCAGTTCCTACTTACAGAGACTGATTGATTGTTTATTGTTTGGACACATAGTCGGTCCATCTTTGTCCTGTGGTCTGTCCACCTTGTTTGCTTTGTGATTTCAATGATTAGTTAGTACCTTCATTCTTTAGTTTATTATTAGCACGAGCTCATAATTTATGCATCCTTTCGTTTCATCAGGGGAAAGAAACTTCAGATCCAGAAAATGGTAGGCAGTGTCCCTTCTTTGAAGAGCTGCATGGTGTCTTCACAGAGCGTGCTAGAAATATGCAGCAACAACTCCTTGAGTCTGAATCTGGAGTTTCTGTCAAAACGAAACTGAAGCGACCTGGTGGTGACTGGTCATCTCGGGAGTCTGACGACAAGGAAGATGATGGTGAAGAAAGTGACGATGAGAAGCCGATGCACAACAGAAAGAGGAAAGCTGATGACAAGAAACAGCAACATCAAAGAATGTCTGAGAAGTCAAGAACAGGAATTTCGAGCATCCATGAACTGCTGCAGGATTTCCTGGTGCAGCAACAGCACATTGATGTCCGGTGGCGGGAGATGATCGAGAGACGTGCCCAGGAGCGGGTGGTTTTCGAACAACAATGGCGGCTGACAATGCAGAGGCTGGAGCAGGAGCGGTTGTTGCTGGAACACTCGTGGATGGAACGGGAGGAGCGAAGAAGGATGAAAGAAGAAGCACGAGCTGAAAAAAGGGATGCACTCCTGACCACTCTGTTGAACAAACTCCTGCAGGAAGATCTATAGCAGGATAAGCTTGCTCTTCGTTTCATCAGGGTTTAGCTGCAGAAGTGGACATTTTCTCACCTTGTTTTATCAATTCTTTGTAGCTACTACATTTATTGACATGTGATTTGTCAATTTCTTTCAGCATCTGTATTAGGTTCCTAGGGCTCTTTTTTCCAGTTATTTAGTAGAGCAAAGCTAATTTTATGCT
Zm00001d002424_T002 from maize genome v4
Amino Acid Sequence
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MMEAGGAGAGAGGRDERVPQWGAQETRELIMARGEMERETVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNR
YKGKETSDPENGRQCPFFEELHGVFTERARNMQQQLLESESGVSVKTKLKRPGGDWSSRESDDKEDDGEESDDEKPMHNR
KRKADDKKQQHQRMSEKSRTGISSIHELLQDFLVQQQHIDVRWREMIERRAQERVVFEQQWRLTMQRLEQERLLLEHSWM
EREERRRMKEEARAEKRDALLTTLLNKLLQEDL
Nucleotide Sequence
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AAGAAAACGGGGGTTAAGGGCAGGG...
AAGAAAACGGGGGTTAAGGGCAGGGCCTGCAGTCCCCCTCCGCGGCCGCGCCTCGCCGCGGTTTACAGCCTGTCGTTAGGGATTGCTACCGTTGGTCAAGTCGCGCTGAGGAGACGAGGGCAGGAGGGGCGGTGGGCTGTGGGATGATGGAGGCGGGCGGCGCGGGCGCGGGAGCGGGAGGAAGGGACGAGAGGGTACCGCAGTGGGGCGCGCAGGAGACGCGGGAGCTAATCATGGCGCGCGGGGAGATGGAGCGGGAGACCGTCGCGGCGCGCCGCAGCGCCAAGACGATGTGGGAGGCCGTCGCCGCGCGCCTCCGGGAGCGAGGCTACCGACGAACCGCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCGTCAACCGCTACAAGGGGAAAGAAACTTCAGATCCAGAAAATGGTAGGCAGTGTCCCTTCTTTGAAGAGCTGCATGGTGTCTTCACAGAGCGTGCTAGAAATATGCAGCAACAACTCCTTGAGTCTGAATCTGGAGTTTCTGTCAAAACGAAACTGAAGCGACCTGGTGGTGACTGGTCATCTCGGGAGTCTGACGACAAGGAAGATGATGGTGAAGAAAGTGACGATGAGAAGCCGATGCACAACAGAAAGAGGAAAGCTGATGACAAGAAACAGCAACATCAAAGAATGTCTGAGAAGTCAAGAACAGGAATTTCGAGCATCCATGAACTGCTGCAGGATTTCCTGGTGCAGCAACAGCACATTGATGTCCGGTGGCGGGAGATGATCGAGAGACGTGCCCAGGAGCGGGTGGTTTTCGAACAACAATGGCGGCTGACAATGCAGAGGCTGGAGCAGGAGCGGTTGTTGCTGGAACACTCGTGGATGGAACGGGAGGAGCGAAGAAGGATGAAAGAAGAAGCACGAGCTGAAAAAAGGGATGCACTCCTGACCACTCTGTTGAACAAACTCCTGCAGGAAGATCTATAGCAGGATAAGCTTGCTCTTCGTTTCATCAGGGTTTAGCTGCAGAAGTGGACATTTTCTCACCTTGTTTTATCAATTCTTTGTAGCTACTACATTTATTGACATGTGATTTGTCAATTTCTTTCAGCATCTGTATTAGGTTCCTAGGGCTCTTTTTTCCAGTTATTTAGTAGAGCAAAGCTAATTTTATGCTTAATTGTGGTTGTAAGTATCATACTGCCAAGTAGGTCTACAGACCAATGCTAATATGCTTGAGAGATAATTGGTTTCTCTGTCAGCAATGGACAGAAGTTTATGTAA
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